tobi/qmd

# Install globally (Node or Bun)
npm install -g @tobilu/qmd
# or
bun install -g @tobilu/qmd

# Or run directly
npx @tobilu/qmd ...
bunx @tobilu/qmd ...

# Create collections for your notes, docs, and meeting transcripts
qmd collection add ~/notes --name notes
qmd collection add ~/Documents/meetings --name meetings
qmd collection add ~/work/docs --name docs

# Add context to help with search results, each piece of context will be returned when matching sub documents are returned. This works as a tree. This is the key feature of QMD as it allows LLMs to make much better contextual choices when selecting documents. Don't sleep on it!
qmd context add qmd://notes "Personal notes and ideas"
qmd context add qmd://meetings "Meeting transcripts and notes"
qmd context add qmd://docs "Work documentation"

# Generate embeddings for semantic search
qmd embed

# Search across everything
qmd search "project timeline"           # Fast keyword search
qmd vsearch "how to deploy"             # Semantic search
qmd query "quarterly planning process"  # Hybrid + reranking (best quality)

# Get a specific document
qmd get "meetings/2024-01-15.md"

# Get a document by docid (shown in search results)
qmd get "#abc123"

# Get multiple documents by glob pattern
qmd multi-get "journals/2025-05*.md"

# Search within a specific collection
qmd search "API" -c notes

# Export all matches for an agent
qmd search "API" --all --files --min-score 0.3

# Get structured results for an LLM
qmd search "authentication" --json -n 10

# List all relevant files above a threshold
qmd query "error handling" --all --files --min-score 0.4

# Retrieve full document content
qmd get "docs/api-reference.md" --full

{
  "mcpServers": {
    "qmd": {
      "command": "qmd",
      "args": ["mcp"]
    }
  }
}

claude plugin marketplace add tobi/qmd
claude plugin install qmd@qmd

{
  "mcpServers": {
    "qmd": {
      "command": "qmd",
      "args": ["mcp"]
    }
  }
}

# Foreground (Ctrl-C to stop)
qmd mcp --http                    # localhost:8181
qmd mcp --http --port 8080        # custom port
qmd mcp --http --host 0.0.0.0     # bind all interfaces (e.g. container probes)

# Background daemon
qmd mcp --http --daemon           # start, writes PID to ~/.cache/qmd/mcp.pid
qmd mcp stop                      # stop via PID file
qmd status                        # shows "MCP: running (PID ...)" when active

npm install @tobilu/qmd

import { createStore } from '@tobilu/qmd'

const store = await createStore({
  dbPath: './my-index.sqlite',
  config: {
    collections: {
      docs: { path: '/path/to/docs', pattern: '**/*.md' },
    },
  },
})

const results = await store.search({ query: "authentication flow" })
console.log(results.map(r => `${r.title} (${Math.round(r.score * 100)}%)`))

await store.close()

import { createStore } from '@tobilu/qmd'

// 1. Inline config — no files needed besides the DB
const store = await createStore({
  dbPath: './index.sqlite',
  config: {
    collections: {
      docs: { path: '/path/to/docs', pattern: '**/*.md' },
      notes: { path: '/path/to/notes' },
    },
  },
})

// 2. YAML config file — collections defined in a file
const store2 = await createStore({
  dbPath: './index.sqlite',
  configPath: './qmd.yml',
})

// 3. DB-only — reopen a previously configured store
const store3 = await createStore({ dbPath: './index.sqlite' })

// Simple query — auto-expanded via LLM, then BM25 + vector + reranking
const results = await store.search({ query: "authentication flow" })

// With options
const results2 = await store.search({
  query: "rate limiting",
  intent: "API throttling and abuse prevention",
  collection: "docs",
  limit: 5,
  minScore: 0.3,
  explain: true,
})

// Pre-expanded queries — skip auto-expansion, control each sub-query
const results3 = await store.search({
  queries: [
    { type: 'lex', query: '"connection pool" timeout -redis' },
    { type: 'vec', query: 'why do database connections time out under load' },
  ],
  collections: ["docs", "notes"],
})

// Skip reranking for faster results
const fast = await store.search({ query: "auth", rerank: false })

// BM25 keyword search (fast, no LLM)
const lexResults = await store.searchLex("auth middleware", { limit: 10 })

// Vector similarity search (embedding model, no reranking)
const vecResults = await store.searchVector("how users log in", { limit: 10 })

// Manual query expansion for full control
const expanded = await store.expandQuery("auth flow", { intent: "user login" })
const results4 = await store.search({ queries: expanded })

// Get a document by path or docid
const doc = await store.get("docs/readme.md")
const byId = await store.get("#abc123")

if (!("error" in doc)) {
  console.log(doc.title, doc.displayPath, doc.context)
}

// Get document body with line range
const body = await store.getDocumentBody("docs/readme.md", {
  fromLine: 50,
  maxLines: 100,
})

// Batch retrieve by glob or comma-separated list
const { docs, errors } = await store.multiGet("docs/**/*.md", {
  maxBytes: 20480,
})

// Add a collection
await store.addCollection("myapp", {
  path: "/src/myapp",
  pattern: "**/*.ts",
  ignore: ["node_modules/**", "*.test.ts"],
})

// List collections with document stats
const collections = await store.listCollections()
// => [{ name, pwd, glob_pattern, doc_count, active_count, last_modified, includeByDefault }]

// Get names of collections included in queries by default
const defaults = await store.getDefaultCollectionNames()

// Remove / rename
await store.removeCollection("myapp")
await store.renameCollection("old-name", "new-name")

// Add context for a path within a collection
await store.addContext("docs", "/api", "REST API reference documentation")

// Set global context (applies to all collections)
await store.setGlobalContext("Internal engineering documentation")

// List all contexts
const contexts = await store.listContexts()
// => [{ collection, path, context }]

// Remove context
await store.removeContext("docs", "/api")
await store.setGlobalContext(undefined)  // clear global

// Re-index collections by scanning the filesystem
const result = await store.update({
  collections: ["docs"],  // optional — defaults to all
  onProgress: ({ collection, file, current, total }) => {
    console.log(`[${collection}] ${current}/${total} ${file}`)
  },
})
// => { collections, indexed, updated, unchanged, removed, needsEmbedding }

// Generate vector embeddings
const embedResult = await store.embed({
  force: false,           // true to re-embed everything
  chunkStrategy: "auto",  // "regex" (default) or "auto" (AST for code files)
  onProgress: ({ current, total, collection }) => {
    console.log(`Embedding ${current}/${total}`)
  },
})

import type {
  QMDStore,            // The store interface
  SearchOptions,       // Options for search()
  LexSearchOptions,    // Options for searchLex()
  VectorSearchOptions, // Options for searchVector()
  HybridQueryResult,   // Search result with score, snippet, context
  SearchResult,        // Result from searchLex/searchVector
  ExpandedQuery,       // Typed sub-query { type: 'lex'|'vec'|'hyde', query }
  DocumentResult,      // Document metadata + body
  DocumentNotFound,    // Error with similarFiles suggestions
  MultiGetResult,      // Batch retrieval result
  UpdateProgress,      // Progress callback info for update()
  UpdateResult,        // Aggregated update result
  EmbedProgress,       // Progress callback info for embed()
  EmbedResult,         // Embedding result
  StoreOptions,        // createStore() options
  CollectionConfig,    // Inline config shape
  IndexStatus,         // From getStatus()
  IndexHealthInfo,     // From getIndexHealth()
} from '@tobilu/qmd'

import {
  extractSnippet,              // Extract a relevant snippet from text
  addLineNumbers,              // Add line numbers to text
  DEFAULT_MULTI_GET_MAX_BYTES, // Default max file size for multiGet (64KB)
  Maintenance,                 // Database maintenance operations
} from '@tobilu/qmd'

// Close the store — disposes LLM models and DB connection
await store.close()

┌─────────────────────────────────────────────────────────────────────────────┐
│                         QMD Hybrid Search Pipeline                          │
└─────────────────────────────────────────────────────────────────────────────┘

                              ┌─────────────────┐
                              │   User Query    │
                              └────────┬────────┘
                                       │
                        ┌──────────────┴──────────────┐
                        ▼                             ▼
               ┌────────────────┐            ┌────────────────┐
               │ Query Expansion│            │  Original Query│
               │  (fine-tuned)  │            │   (×2 weight)  │
               └───────┬────────┘            └───────┬────────┘
                       │                             │
                       │ 2 alternative queries       │
                       └──────────────┬──────────────┘
                                      │
              ┌───────────────────────┼───────────────────────┐
              ▼                       ▼                       ▼
     ┌─────────────────┐     ┌─────────────────┐     ┌─────────────────┐
     │ Original Query  │     │ Expanded Query 1│     │ Expanded Query 2│
     └────────┬────────┘     └────────┬────────┘     └────────┬────────┘
              │                       │                       │
      ┌───────┴───────┐       ┌───────┴───────┐       ┌───────┴───────┐
      ▼               ▼       ▼               ▼       ▼               ▼
  ┌───────┐       ┌───────┐ ┌───────┐     ┌───────┐ ┌───────┐     ┌───────┐
  │ BM25  │       │Vector │ │ BM25  │     │Vector │ │ BM25  │     │Vector │
  │(FTS5) │       │Search │ │(FTS5) │     │Search │ │(FTS5) │     │Search │
  └───┬───┘       └───┬───┘ └───┬───┘     └───┬───┘ └───┬───┘     └───┬───┘
      │               │         │             │         │             │
      └───────┬───────┘         └──────┬──────┘         └──────┬──────┘
              │                        │                       │
              └────────────────────────┼───────────────────────┘
                                       │
                                       ▼
                          ┌───────────────────────┐
                          │   RRF Fusion + Bonus  │
                          │  Original query: ×2   │
                          │  Top-rank bonus: +0.05│
                          │     Top 30 Kept       │
                          └───────────┬───────────┘
                                      │
                                      ▼
                          ┌───────────────────────┐
                          │    LLM Re-ranking     │
                          │  (qwen3-reranker)     │
                          │  Yes/No + logprobs    │
                          └───────────┬───────────┘
                                      │
                                      ▼
                          ┌───────────────────────┐
                          │  Position-Aware Blend │
                          │  Top 1-3:  75% RRF    │
                          │  Top 4-10: 60% RRF    │
                          │  Top 11+:  40% RRF    │
                          └───────────────────────┘

# Use Qwen3-Embedding-0.6B for better multilingual (CJK) support
export QMD_EMBED_MODEL="hf:Qwen/Qwen3-Embedding-0.6B-GGUF/Qwen3-Embedding-0.6B-Q8_0.gguf"

# After changing the model, re-embed all collections:
qmd embed -f

npm install -g @tobilu/qmd
# or
bun install -g @tobilu/qmd

git clone https://github.com/tobi/qmd
cd qmd
npm install
npm link

# Create a collection from current directory
qmd collection add . --name myproject

# Create a collection with explicit path and custom glob mask
qmd collection add ~/Documents/notes --name notes --mask "**/*.md"

# List all collections
qmd collection list

# Remove a collection
qmd collection remove myproject

# Rename a collection
qmd collection rename myproject my-project

# List files in a collection
qmd ls notes
qmd ls notes/subfolder

# Show collection details (path, glob mask, include status, context count)
qmd collection show notes

# Include or exclude a collection from default (unscoped) queries
qmd collection include notes
qmd collection exclude notes

# Run a command before every `qmd update` (e.g. git pull); empty arg clears it
qmd collection update-cmd notes 'git pull --rebase'
qmd collection update-cmd notes

# Embed all indexed documents (900 tokens/chunk, 15% overlap)
qmd embed

# Force re-embed everything
qmd embed -f

# Enable AST-aware chunking for code files (TS, JS, Python, Go, Rust)
qmd embed --chunk-strategy auto

# Also works with query for consistent chunk selection
qmd query "auth flow" --chunk-strategy auto

# Memory control for large corpora / constrained systems
qmd embed --max-docs-per-batch 50   # cap docs per embedding batch
qmd embed --max-batch-mb 64         # cap batch size in MB

# Add context to a collection (using qmd:// virtual paths)
qmd context add qmd://notes "Personal notes and ideas"
qmd context add qmd://docs/api "API documentation"

# Add context from within a collection directory
cd ~/notes && qmd context add "Personal notes and ideas"
cd ~/notes/work && qmd context add "Work-related notes"

# Add global context (applies to all collections)
qmd context add / "Knowledge base for my projects"

# List all contexts
qmd context list

# Remove context
qmd context rm qmd://notes/old

# ~/.config/qmd/index.yml

# Context applied to every collection (system-message style). Optional.
global_context: "Knowledge base for my projects"

# Terminal hyperlink template for search results. Optional.
# Overridden by the QMD_EDITOR_URI env var. See "Editor Links" below.
editor_uri: "vscode://file{path}:{line}:{col}"

# Override the default GGUF models per role. Optional — omit to use the
# built-in defaults. `qmd init` writes this block pre-filled with the
# resolved defaults. See "Model Configuration" for the default URIs.
models:
  embed: "hf:ggml-org/embeddinggemma-300M-GGUF/embeddinggemma-300M-Q8_0.gguf"
  rerank: "hf:ggml-org/Qwen3-Reranker-0.6B-Q8_0-GGUF/qwen3-reranker-0.6b-q8_0.gguf"
  generate: "hf:tobil/qmd-query-expansion-1.7B-gguf/qmd-query-expansion-1.7B-q4_k_m.gguf"

# One entry per collection. The key is the collection name.
collections:
  notes:
    path: /Users/me/notes        # absolute path to index (required)
    pattern: "**/*.md"           # glob mask (default: **/*.md)
    ignore:                      # glob patterns to exclude from indexing
      - "Archive/**"
      - "**/drafts/**"
    update: "git pull --rebase"  # bash command run before each `qmd update`
    includeByDefault: true       # include in unscoped queries (default: true)
    context:                     # path prefix → description; longest match wins
      "/": "Personal notes and ideas"
      "/work": "Work-related notes"

collections:
  wiki:
    path: ~/reference/wiki
    update: "git pull --ff-only"

$ qmd update
[1/3] wiki (**/*.md)
    Running update command: git pull --ff-only
    Already up to date.
Collection: ~/reference/wiki (**/*.md)
Indexed: 0 new, 2 updated, 340 unchanged, 0 removed

qmd collection update-cmd wiki 'git pull --ff-only'   # set
qmd collection update-cmd wiki                         # clear

┌──────────────────────────────────────────────────────────────────┐
│                        Search Modes                              │
├──────────┬───────────────────────────────────────────────────────┤
│ search   │ BM25 full-text search only                           │
│ vsearch  │ Vector semantic search only                          │
│ query    │ Hybrid: FTS + Vector + Query Expansion + Re-ranking  │
└──────────┴───────────────────────────────────────────────────────┘

# Full-text search (fast, keyword-based)
qmd search "authentication flow"

# Vector search (semantic similarity)
qmd vsearch "how to login"

# Hybrid search with re-ranking (best quality)
qmd query "user authentication"

# Search options
-n <num>           # Number of results (default: 5, or 20 for --files/--json)
-c, --collection   # Restrict search to a specific collection
--all              # Return all matches (use with --min-score to filter)
--min-score <num>  # Minimum score threshold (default: 0)
--full             # Show full document content
--line-numbers     # Add line numbers to output
--explain          # Include retrieval score traces (query, JSON/CLI output)
--index <name>     # Use named index
--intent "<text>"  # Disambiguation context (e.g. "web page load times")
--no-rerank        # Skip LLM reranking (RRF scores only; faster on CPU)
-C, --candidate-limit <n>  # Max candidates to rerank (default: 40)
--full-path        # Emit on-disk filesystem paths instead of qmd:// URIs

# Output formats (for search and multi-get)
--format <kind>    # cli (default) | json | csv | md | xml | files
                   # (--json, --csv, --md, --xml, --files are legacy aliases)

# Get options
qmd get <file>[:from[:count]]  # Get document; optional start line and count
-l <num>                       # Maximum lines to return
--from <num>                   # Start line (overrides the :from suffix)
--no-line-numbers              # Disable line numbering (on by default)

# Multi-get options
-l <num>           # Maximum lines per file
--max-bytes <num>  # Skip files larger than N bytes (default: 64KB)

qmd search "auth" -c notes           # single collection
qmd search "auth" -c notes -c docs   # multiple collections (OR)

docs/guide.md:42 #a1b2c3
Title: Software Craftsmanship
Context: Work documentation
Score: 93%

This section covers the **craftsmanship** of building
quality software with attention to detail.
See also: engineering principles


notes/meeting.md:15 #d4e5f6
Title: Q4 Planning
Context: Personal notes and ideas
Score: 67%

Discussion about code quality and craftsmanship
in the development process.

# VS Code (default)
export QMD_EDITOR_URI="vscode://file/{path}:{line}:{col}"

# Cursor
export QMD_EDITOR_URI="cursor://file/{path}:{line}:{col}"

# Zed
export QMD_EDITOR_URI="zed://file/{path}:{line}:{col}"

# Sublime Text
export QMD_EDITOR_URI="subl://open?url=file://{path}&line={line}"

# Get 10 results with minimum score 0.3
qmd query -n 10 --min-score 0.3 "API design patterns"

# Output as markdown for LLM context
qmd search --md --full "error handling"

# JSON output for scripting
qmd query --json "quarterly reports"

# Inspect how each result was scored (RRF + rerank blend)
qmd query --json --explain "quarterly reports"

# Use separate index for different knowledge base
qmd --index work search "quarterly reports"

{
  "docid": "#6c90f0",
  "score": 0.89,
  "file": "qmd://qmd/README.md",
  "explain": {
    "ftsScores": [0.892, 0.907],
    "vectorScores": [0.540, 0.484],
    "rrf": {
      "rank": 1,
      "weight": 0.75,
      "baseScore": 0.123,
      "topRankBonus": 0.05,
      "totalScore": 0.173,
      "contributions": [
        { "source": "fts", "queryType": "original", "query": "reranking",
          "rank": 1, "weight": 2, "backendScore": 0.892, "rrfContribution": 0.0328 }
      ]
    }
  }
}

# Show index status and collections with contexts
qmd status

# Re-index all collections. If a collection has a configured update command
# (e.g. `git pull`), it runs first — set one with `qmd collection update-cmd`.
qmd update

# Diagnose the install (runtime, sqlite-vec, embedding fingerprints, GPU probe)
qmd doctor

# Initialize a project-local index in the current directory
qmd init

# Get document by filepath (with fuzzy matching suggestions)
qmd get notes/meeting.md

# Get document by docid (from search results)
qmd get "#abc123"

# Get document starting at line 50, max 100 lines
qmd get notes/meeting.md:50 -l 100

# Read 40 lines starting at line 120 via the :from:count suffix (works with docids)
qmd get notes/meeting.md:120:40
qmd get "#abc123:120:40"

# get / multi-get are line-numbered by default; disable with --no-line-numbers
qmd get notes/meeting.md --no-line-numbers

# Get multiple documents by glob pattern
qmd multi-get "journals/2025-05*.md"

# Get multiple documents by comma-separated list (supports docids)
qmd multi-get "doc1.md, doc2.md, #abc123"

# Limit multi-get to files under 20KB
qmd multi-get "docs/*.md" --max-bytes 20480

# Output multi-get as JSON for agent processing
qmd multi-get "docs/*.md" --json

# Clean up cache and orphaned data
qmd cleanup

# One-time setup (indexes the repo's test corpus into its own collection)
qmd collection add test/eval-docs --name eval-docs
qmd embed -c eval-docs

# Run the benchmark (table output)
qmd bench src/bench/fixtures/example.json

# JSON output for programmatic analysis
qmd bench src/bench/fixtures/example.json --json

{
  "description": "My benchmark",
  "version": 1,
  "collection": "my-collection",
  "queries": [
    {
      "id": "find-auth",
      "query": "authentication flow",
      "type": "semantic",
      "expected_files": ["docs/auth-design.md"],
      "expected_in_top_k": 3
    }
  ]
}

collections     -- Indexed directories with name and glob patterns
path_contexts   -- Context descriptions by virtual path (qmd://...)
documents       -- Markdown content with metadata and docid (6-char hash)
documents_fts   -- FTS5 full-text index
content_vectors -- Embedding chunks (hash, seq, pos, 900 tokens each)
vectors_vec     -- sqlite-vec vector index (hash_seq key)
llm_cache       -- Cached LLM responses (query expansion, rerank scores)

Collection ──► Glob Pattern ──► Markdown Files ──► Parse Title ──► Hash Content
    │                                                   │              │
    │                                                   │              ▼
    │                                                   │         Generate docid
    │                                                   │         (6-char hash)
    │                                                   │              │
    └──────────────────────────────────────────────────►└──► Store in SQLite
                                                                       │
                                                                       ▼
                                                                  FTS5 Index

Document ──► Smart Chunk (~900 tokens) ──► Format each chunk ──► node-llama-cpp ──► Store Vectors
                │                           "title | text"        embedBatch()
                │
                └─► Chunks stored with:
                    - hash: document hash
                    - seq: chunk sequence (0, 1, 2...)
                    - pos: character position in original

Query ──► LLM Expansion ──► [Original, Variant 1, Variant 2]
                │
      ┌─────────┴─────────┐
      ▼                   ▼
   For each query:     FTS (BM25)
      │                   │
      ▼                   ▼
   Vector Search      Ranked List
      │
      ▼
   Ranked List
      │
      └─────────┬─────────┘
                ▼
         RRF Fusion (k=60)
         Original query ×2 weight
         Top-rank bonus: +0.05/#1, +0.02/#2-3
                │
                ▼
         Top 30 candidates
                │
                ▼
         LLM Re-ranking
         (yes/no + logprob confidence)
                │
                ▼
         Position-Aware Blend
         Rank 1-3:  75% RRF / 25% reranker
         Rank 4-10: 60% RRF / 40% reranker
         Rank 11+:  40% RRF / 60% reranker
                │
                ▼
         Final Results

const DEFAULT_EMBED_MODEL = "hf:ggml-org/embeddinggemma-300M-GGUF/embeddinggemma-300M-Q8_0.gguf";
const DEFAULT_RERANK_MODEL = "hf:ggml-org/Qwen3-Reranker-0.6B-Q8_0-GGUF/qwen3-reranker-0.6b-q8_0.gguf";
const DEFAULT_GENERATE_MODEL = "hf:tobil/qmd-query-expansion-1.7B-gguf/qmd-query-expansion-1.7B-q4_k_m.gguf";

// For queries
"task: search result | query: {query}"

// For documents
"title: {title} | text: {content}"